Metal Gear Solid: The Twin Snakes
March 09, 2004
During the fight with Psycho Mantis he will say he's able to read the player's mind and he will do so by telling the title of games that the player has played, actually games found on the Memory Card inserted in Slot 1. Among the possible save files recognized by the game is The Legend of Zelda: The Wind Waker.
Metal Gear Solid: The Twin Snakes was licensed by Nintendo to be released on the GameCube, so Konami was able to include references to Nintendo series, including Zelda.